All functions
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ADNIMERGE-package
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ADNIMERGE: Clinical and biomarker data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) |
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adas
|
ADAS-Cognitive |
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addcomm
|
Additional Comments |
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admcba
|
AD Metabolomics Consortium Bile Acids |
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admcbapp
|
AD Metabolomics Consortium Bile Acids - Post-processed |
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admcbarcelonapurine
|
AD Metabolomics Consortium Barcelona Purines |
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admcdukep180fia
|
AD Metabolomics Consortium Duke Biocrates P180 Kit Flow injection analysis |
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admcdukep180fiaadni2go
|
ADMC Duke p180 Flow Injection Analysis [ADNI GO,2] |
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admcdukep180uplc
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AD Metabolomics Consortium Duke Biocrates P180 Kit Ultra Performance Liquid Chromatography |
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admcdukep180uplcadni2go
|
ADMC Duke p180 Ultra Performance Liquid Chromatography [ADNI GO,2] |
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admcgctof
|
ADMC Metabolomic Analysis by Gas chromatography time of flight mass spectrometry (GCTOF) Data [ADNI1] |
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admcgutmetaboliteslong
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ADMC U Hawaii UPLC-MS/MS Gut Metabolites Serum Longitudinal |
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admchivalmetab
|
Targeted UHPLC-MS analysis of High-Value Metabolites in Serum Samples |
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admclipidomics
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ADMC Lipidomics Measured Lipid Molecules |
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admclipidomicsmeiklelablong
|
ADMC Lipidomics Meikle Lab Longitudinal Data Matrix |
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admcm2oveba
|
ADMC M2OVE-AD ADNIGO-2 Bile Acids |
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admcpdinesipcisratios
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AD Metabolomics Consortium Phenomenome Phosphatidylcholine (PtdCho), Lysophosphatidylcholine (LPtdCho) Flow Injection Negative Ionization LC-MS/MS Internal Standard Ratios |
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admcpdipeisratios
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AD Metabolomics Consortium Phenomenome Phosphatidylethanolamine (PtdEtn), Plasmenylethanolamine (PlsEtn) Flow Injection LC-MS/MS Internal Standard Ratios |
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admcpdipepeakheights
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AD Metabolomics Consortium Phenomenome Phosphatidylethanolamine (PtdEtn), Plasmenylethanolamine (PlsEtn) Flow Injection LC-MS/MS Internal Standard Ratios |
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admcpdipesipcisratios
|
AD Metabolomics Consortium Phenomenome Phosphatidylcholine (PtdCho), Lysophosphatidylcholine (LPtdCho), Sphingomyeline (SM) Flow Injection Positive Ionization LC-MS/MS Internal Standard Ratios |
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adni1lipidomicsrader
|
Rader Lab ADNI 1 Lipids CAD ALZ |
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adni3_urmc_labdata
|
ADNI3 URMC Lab Data |
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adni_dian_comparison
|
The DIAN-ADNI Comparison Study |
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adnimerge
|
Key ADNI tables merged into one table |
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adnimerger()
|
Function to merge commonly used ADNI data tables |
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adninightingale
|
ADMC Nightingale Platform NMR Analysis of Lipoproteins and Metabolites [ADNI 1, GO, 2] |
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adninightingale2
|
ADMC Nightingale Platform NMR Post-Unblinding Re-Analysis of Lipoproteins and Metabolites |
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adninightingalelong
|
ADMC Nightingale Platform NMR Analysis of Lipoproteins and Metabolites Longitudinal |
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adrc_emory_dde
|
DDE analysis summary |
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adsxlist
|
Diagnosis and Symptoms Checklist |
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adverse
|
Adverse Events Log |
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aecheck
|
Adverse Event Checklist |
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agrocampus
|
Institut Agro-ecole interne Agrocampus Ouest lipids in red blood cells |
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aliquot_list
|
Aliquot count in the LDMS database |
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amymeta
|
Amyloid PET Scan Information |
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amyqc
|
Amyloid PET QC |
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apoe
|
ApoE Genotyping - Draw Data |
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apoe3
|
ADNI3 APOE Genotypes |
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apoego2
|
ADNI GO & 2 APOE Genotypes |
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apoeres
|
ApoE Genotyping - Results |
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arm
|
Diagnosis and scan category assignment at screen |
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av45follow
|
AV-45 24-48 Hour Follow-Up |
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av45meta
|
AV-45 PET Scan Information |
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av45qc
|
AV-45 PET QC Tracking |
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av45vitals
|
AV-45 Pre and Post Injection Vitals |
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avgjacob
|
Average Jacobian - Temporal (Paul Thompson's Lab) |
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baceappbeta
|
Biomarkers Consortium ADNI CSF BACE activity and sAPPbeta |
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backmeds
|
Key Background Medications |
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baimrinmrc
|
Banner Alzheimer's Institute MRI NMRC Summaries |
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baipetnmrc
|
Banner Alzheimer's Institute PET NMRC Summaries |
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baipetnmrcav45
|
Banner Alzheimer's Institute PET NMRC AV45 Summaries |
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baipetnmrcfdg
|
Banner Alzheimer's Institute PET NMRC FDG Summaries |
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baipetnmrcftp
|
Banner Alzheimer's Institute PET NMRC Flortaucipir (F-AV1451) Summaries |
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batemanlab
|
Bateman Lab Plasma Abeta42/Abeta40 Ratio as a Predictor of Brain Amyloidosis |
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bhr
|
Brain Health Registry |
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biomark
|
Biomarker Samples |
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biomarkqc
|
Biomarker Samples Tracking and QC |
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blchange
|
Diagnostic Summary - Baseline Changes |
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blennow_lab_csf_gap_43
|
Blennow Lab CSF GAP 43 |
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blennowcsfnfl
|
Blennow Lab ADNI1 CSF NFL |
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blennowcsfng
|
Blennow Lab ADNI1 CSF Ng |
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blennowplasmanfl
|
Blennow Lab ADNI1 Plasma neurofilament light (NFL) |
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blennowplasmanfllong
|
Blennow Lab ADNI1-2 Plasma neurofilament light (NFL) longitudinal |
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blennowplasmatau
|
Blennow Lab ADNI1 Plasma Tau |
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blscheck
|
Baseline Symptoms Checklist |
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bsi
|
Boundary Shift Integral Summaries (Nick Fox's lab) |
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cbb_results
|
Cogstate Battery Results |
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cbbcomp
|
Cogstate Brief Battery |
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cci
|
Cognitive Change Index |
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cdr
|
Clinical Dementia Rating |
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cellimort
|
Cells For Immortalization Speciman Collection |
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clielg
|
Clinician Verification |
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clirev
|
Clinician Review |
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consents
|
Consents |
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conversions
|
Conversions Confirmed by Conversion Committee |
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crossval
|
Cross-Validation |
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csfalphasyn
|
CSF Alpha-synuclein, Jing Zhang Lab, University of Washington |
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csfc3fh
|
CSF Complement 3 & Factor H, Jing Zhang Lab, University of Washington |
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csfhc
|
Baseline CSF homocysteine data. ADNI Biomarker Core laboratory. |
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csfmeth
|
Method of CSF Collection |
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csfmrm
|
Biomarkers Consortium CSF Proteomics MRM data set |
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csfproteomics
|
FNIH Biomarkers Consortium CSF Proteomics Project |
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datadic
|
Data Dictionary |
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desikanlab
|
Desikan Lab Polygenic Hazard Score (PHS) |
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devlog
|
Protocol Deviations Log |
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dtiroi
|
DTI ROI summary measures |
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dtiroi_mean_v2
|
USC - DTI ROI Summary Measures v2 (Mean) |
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dtiroi_robustmean_v2
|
USC - DTI ROI Summary Measures v2 (Robust Mean) |
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dtiroi_v1
|
USC - DTI ROI Summary Measures v1 |
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dtiroi_v2
|
USC - DTI ROI Summary Measures v2 (Mean) |
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dxsum
|
Diagnostic Summary |
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ecg
|
ECG |
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ecog.score()
|
Score Everyday Cognition E-Cog |
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ecogpt
|
Everyday Cognition - Participant Self-Report |
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ecogsp
|
Everyday Cognition - Study Partner Report |
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eligconf
|
Eligibility Confirmation |
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emory_peptideratios
|
Emory University CSF Targeted MS |
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enrolltr
|
Enrollment Tracking |
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euroimmun
|
EUROIMMUN CSF Beta-Amyloid |
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exclusio
|
Exclusion Criteria |
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excptlog
|
Inclusion/Exclusion Exceptions Log |
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extconsnt
|
Extension Consent Form |
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faganlab
|
Fagan lab summaries |
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famhxpar
|
Family History - Parents |
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famhxsib
|
Family History - Sibling Log |
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faq
|
Functional Assessment Questionnaire |
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fci
|
Financial Capacity Instrument Short Form (FCI-SF) |
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fhq
|
Family History Questionnaire |
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flairqc
|
FLAIR QC |
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foxlabbsi
|
Fox Lab BSI measures |
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fujirebioabeta
|
Fujirebio Beta-Amyloid Ratio |
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gdscale
|
Geriatric Depression Scale |
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genetic
|
Genetic Sample Collection |
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haass_washu_lab
|
Haass and Wash U lab summaries |
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hcres
|
Homocysteine - Results |
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hulab
|
ADNI Data Hu Lab |
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inclusio
|
Inclusion Criteria |
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inithealth
|
Initial Health Assessment |
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inventory
|
An inventory of all ADNI assessments and samples |
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isoprostane
|
Baseleine isoprostanes data. ADNI Biomarker Core laboratory |
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item
|
Item Level Data |
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labdata
|
Laboratory Data |
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labtests
|
Clinical Laboratory Tests |
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latent_disease_time
|
Latent Disease Time Estimates, Alzheimer's Therapeutic Research Institute (ATRI) of University of Southern California |
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lipidomicsdatabase_meiklelab
|
ADMC Lipidomics Meikle Lab Baseline Data Matrix [ADNI1] |
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loclab
|
CSF - Local Lab Results |
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m24csfcsnt
|
Month 24 CSF Extension Consent |
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mayoadirl_mri_fmri
|
Jack Lab - fMRI Network Failure Quotient (NFQ) |
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mayoadirl_mri_fmri_nfq
|
Jack Lab - fMRI Network Failure Quotient (NFQ) |
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mayoadirl_mri_imageqc
|
Jack Lab - ADNI GO/2/3 MRI QC |
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mayoadirl_mri_mch
|
Jack Lab - ADNI MRI MCH |
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mayoadirl_mri_quality
|
Jack Lab - MRI Quality |
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mayoadirl_mri_tbmsyn
|
Jack Lab - TBM-SyN Based Scores |
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medhist
|
Medical History |
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mesoscale
|
Meso Scale Diagnostics Analysis of Residual CSF Samples |
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mmse
|
Mini Mental State Exam |
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moca
|
MoCA |
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modhach
|
Modified Hachinski |
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monelg
|
Monitor Eligibility |
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monrev
|
Monitor Review |
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mri3gometa
|
3T MRI Scan Information |
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mri3meta
|
3T MRI Scan Information |
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mri_infarcts
|
MRI Infarcts |
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mrib1calib
|
MRI B1 Calibration |
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mrimeta
|
1.5T MRI Scan Information |
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mrimppro
|
MRI MPRAGE Process |
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mrimprank
|
MRI MPRAGE Ranking |
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mrinclusio
|
MRI Subject Inclusion |
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mriphantom
|
MRI Phantom |
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mriprot
|
MRI Protocol |
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mriquality
|
MRI Quality |
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mriread
|
MRI Clinical Read |
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mriserial
|
MRI Serial |
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neurobat
|
Neuropsychological Battery |
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neuroexm
|
Neurological Exam |
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neuropath
|
NACC Neuropathology Data Form |
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npconsent
|
Neuropathology Extension Consent |
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npi
|
Neuropsychiatric Inventory Examination |
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npiq
|
Neuropsychiatric Inventory Q |
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npstatus
|
Neuropathology Status |
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nyufdghip
|
NYU FDG-PET Hippocampus (pons normalized) |
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otconsent
|
Addenda Consent Tracking |
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otdisc
|
Other Discontinuations and Withdrawals |
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otelgtau
|
Tau AV-1451 PET Eligibility |
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pacc()
|
Generate ADNI modified versions of the Preclinical Alzheimer's Cognitive Composite (PACC) |
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petmeta
|
PET Scan Information |
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petqc
|
PET QC Tracking |
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physical
|
Physical Exam |
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pibapprove
|
PIB Approval |
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pibconsent
|
PIB Consent |
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pibmeta
|
PIB Scan Information |
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pibpetsuvr
|
U Pitt PIB PET Analysis |
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pibqc
|
PIB QC Tracking |
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picslashs
|
ASHS volume data |
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plasma_abeta_project_adx_vumc
|
FNIH Biomarkers Consortium Plasma Abeta Project: ADx VUmc |
|
plasma_abeta_project_quanterix
|
FNIH Biomarkers Consortium Plasma Abeta Project: Quanterix |
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plasma_abeta_project_roche
|
FNIH Biomarkers Consortium Plasma Abeta Project: Roche |
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plasma_abeta_project_shimadzu
|
FNIH Biomarkers Consortium Plasma Abeta Project: Shimadzu |
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plasma_abeta_project_u_of_gothenburg
|
FNIH Biomarkers Consortium Plasma Abeta Project: U of Gothenburg |
|
plasma_abeta_project_wash_u
|
FNIH Biomarkers Consortium Plasma Abeta Project: Wash U |
|
plasmaabeta
|
ABeta40 and ABeta42 quantification in plasma using ABtest40 and ABtest42 |
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ptdemog
|
Participant Demographic Information |
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publicity
|
Publicity Tracking |
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rbmqc
|
Rules Based Medicine Plasma Multiplex QC Data |
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rbmraw
|
Rules Based Medicine Plasma Multiplex Raw Data |
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recadsx
|
Diagnosis and Symptoms Log |
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recadv
|
Adverse Events/Hospitalizations - Log |
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recbllog
|
Documentation of Baseline Symptoms Log |
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reccmeds
|
Concurrent Medications Log |
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recfhq
|
Family History Questionnaire Subtable |
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recmhist
|
Medical History |
|
redox
|
Redox Reactive Reagents LLC ADNI R-RAA ELISA |
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registry
|
Registry |
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residual_aliquot_list
|
Residual aliquot count in the LDMS database |
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rorr
|
Return of Research Results |
|
roster
|
Roster |
|
scoreMOCA()
|
Score Montreal Cognitive Assessment (MOCA) without Education Adjustment. |
|
sourceup
|
Source Doc Upload |
|
spap_avid_florbetapir
|
sPAP Avid ADNI Florbetapir summaries |
|
spconsent
|
Study Partner Consent |
|
spinfo
|
Study Partner Information |
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strokesum
|
Stroke Summary |
|
studysum
|
Study Summary |
|
subject
|
Participant Registration |
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taumeta
|
Tau AV-1451 PET Scan Information |
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tauphone
|
Tau AV-1451 Follow-up Phone Contact |
|
tauqc
|
Tau AV-1451 PET QC |
|
tbm
|
Paul Thompson's Lab, Imaging Genetics Center (IGC), University of Southern California - Cross-sectional and longitudinal tensor-based morphometry Versions 2.0 and 2.1 |
|
tcv
|
Total Cranial Vault Segmentation |
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tomm40
|
TOMM40 PolyT variable length polymorphism |
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transfer
|
Participant Transfers |
|
treatdis
|
Early Discontinuation and Withdrawal |
|
uaspmvbm
|
UA (Gene Alexander) MRI SPM voxel based morphometry (VBM) analysis |
|
ucberkeleyav1451
|
UC Berkeley - AV1451 analysis |
|
ucberkeleyav1451_pvc
|
UC Berkeley - AV1451 PVC analysis |
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ucberkeleyav45
|
UC Berkeley - AV45 analysis |
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ucberkeleyfbb
|
UC Berkeley - FBB analysis |
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ucberkeleyfdg
|
UC Berkeley - FDG analysis |
|
ucd_adni1_wmh
|
Univerity of California Davis White Matter Hyperintensity Volumes (ADNI1) |
|
ucd_adni2_wmh
|
Univerity of California Davis White Matter Hyperintensity Volumes (ADNI2) |
|
ucd_adni3_wmh
|
Univerity of California Davis White Matter Hyperintensity Volumes (ADNI3) |
|
ucd_wmh
|
UCD - White Matter Hyperintensity Volumes |
|
ucsdvol
|
Anders Dale Lab (UCSD) - Derived Volumes |
|
ucsfaslfs
|
ASL Perfusion CBF by FreeSurfer ROI |
|
ucsfaslfscbf
|
ASL Perfusion CBF by FreeSurfer ROI |
|
ucsfatrphy
|
UCSF (Colin Studholme) Regional Atrophy Rates |
|
ucsffresfr
|
Longitudinal FreeSurfer |
|
ucsffsl
|
Longitudinal FreeSurfer (FreeSurfer Version 4.4) |
|
ucsffsl51
|
Longitudinal FreeSurfer (5.1) - Final Run w/ All A |
|
ucsffsl51all
|
Longitudinal FreeSurfer (5.1) - All Available Base Image |
|
ucsffsl51y1
|
Longitudinal FreeSurfer (5.1) - Year 1 Base Image |
|
ucsffsx
|
Cross-Sectional FreeSurfer |
|
ucsffsx51
|
Cross-Sectional FreeSurfer (5.1) |
|
ucsffsx51_adni1_3t
|
ADNI-1 3T Cross-Sectional FreeSurfer (5.1) |
|
ucsffsx51final
|
Longitudinal FreeSurfer (5.1) - Final Run w/ All A |
|
ucsffsx6
|
Cross-Sectional FreeSurfer (6.0) |
|
ucsfsntvol
|
UCSF SNT Hippocampal Volumes |
|
ugotptau181
|
University of Gothenburg Longitudinal plasma P-tau181 |
|
upenn_roi_mars
|
UPENN - Hierarchical Parcellation of MRI Using Multi-atlas Labeling Methods |
|
upennbiomk
|
UPENN Biomarker Data |
|
upennbiomk10
|
UPENN CSF Biomarkers Elecsys [ADNI3, batch I] |
|
upennbiomk12_2020
|
UPENN CSF Biomarkers Elecsys |
|
upennbiomk2
|
UPENN Longitudinal Biomarker Data |
|
upennbiomk3
|
UPENN Longitudinal Biomarker Data (3 yr) |
|
upennbiomk4
|
UPENN Longitudinal Biomarker Data (4 yr) |
|
upennbiomk5
|
ADNI GO and ADNI 2: first batch analysis of CSF biomarkers |
|
upennbiomk6
|
ADNI 2: second batch analysis of CSF biomarkers |
|
upennbiomk7
|
UPENN-Third batch analysis of CSF biomarkers |
|
upennbiomk8
|
UPENN ADNI2 Fourth Batch Analyses of CSF Biomarkers |
|
upennbiomk9
|
UPENN CSF Biomarkers Elecsys |
|
upennbiomk_adnidian_es_2017
|
UPENN - ADNI/DIAN study CSF Elecsys results |
|
upennbiomk_master
|
UPENN CSF Biomarker Master |
|
upennmsmsabeta
|
2D-UPLC tandem mass spectrometry measurement of ABeta1-42, ABeta1-40 and ABeta1-38 in ADNI1 BASELINE CSF |
|
upennmsmsabeta2
|
-4 |
|
upennmsmsabeta2crm
|
-4 |
|
upennplasma
|
UPENN Plasma Biomarker Data |
|
upennspare_ad
|
Spatial Pattern of Abnormalities for Recognition of Early AD (SPARE-AD). C. Davatzikos. U. Penn. |
|
upennspare_mci
|
Spatial Pattern of Abnormalities for Recognition of Early MCI to AD conversion (SPARE-MCI). C. Davatzikos. U. Penn. |
|
uucacir
|
UU PET Analysis (Norman Foster) |
|
uwnpsychsum
|
Crane Lab (UW) Neuropsych Summary Scores |
|
uwovent
|
University of Western Ontario (Bartha Lab) Ventricular Volumes |
|
uwplasmaevapogee
|
University of Washington - Plasma EV Apogee |
|
violog
|
Protocol Deviations Log |
|
vitals
|
Vital Signs |
|
zhang
|
CSF Hemoglobin ELISA and PS129 Luminex Assays (Zhang Lab, University of Washington) |