AD Metabolomics Consortium Bile Acids - Post-processed

data(admcbapp)

Format

A data frame with 1671 rows and 58 variables

Details

A dataset with variables as follows:

  • ORIGPROT -4 -4 Original study protocol

  • RID -4 -4 Participant roster ID

  • VISCODE -4 -4 Visit code

  • PLATFORM_ID -4 -4 BILEACID: Biocrates Bile Acid Kit

  • SAMPLE_ID -4 -4 -4

  • PLATE_ID -4 -4 Plate bar code number from which the sample was injected

  • SAMPLE_BAR_CODE -4 -4 -4

  • SPECIES -4 -4 Species of sample

  • MATERIAL -4 -4 For this study the samples are serum

  • WELL_POSITION -4 -4 Well number in the 96-well plate from which the sample was injected

  • SAMPLE_VOLUME -4 -4 The volume of sample injected in microliters

  • SUBJECT_FLAG -4 -4 A flag shows whether a sample were excluded during preprocessing steps; 0: sample were not excluded. 1: sample were excluded

  • CA -4 -4 Cholic acid [M]

  • CDCA -4 -4 Chenodeoxycholic acid [M]

  • DCA -4 -4 Deoxycholic acid [M]

  • GCA -4 -4 Glycocholic acid [M]

  • GCDCA -4 -4 Glycochenodeoxycholic acid [M]

  • GDCA -4 -4 Glycodeoxycholic acid [M]

  • GLCA -4 -4 Glycolithocholic acid [M]

  • GUDCA -4 -4 Glycoursodeoxycholic acid [M]

  • TCA -4 -4 Taurocholic acid [M]

  • TCDCA -4 -4 Taurochenodeoxycholic acid [M]

  • TDCA -4 -4 Taurodeoxycholic acid [M]

  • TLCA -4 -4 Taurolithocholic acid [M]

  • TMCA_A_B -4 -4 -4

  • TUDCA -4 -4 Tauroursodeoxycholic acid [M]

  • UDCA -4 -4 Ursodeoxycholic acid [M]

  • CA.CDCA -4 -4 CA:CDCA ratio

  • DCA.CA -4 -4 DCA:CA ratio [unitless]

  • GLCA.CDCA -4 -4 GLCA:CDCA ratio [unitless]

  • GDCA.CA -4 -4 GDCA:CA ratio [unitless]

  • GDCA.DCA -4 -4 GDCA:DCA ratio [unitless]

  • TDCA.CA -4 -4 TDCA:CA ratio [unitless]

  • TLCA.CDCA -4 -4 TLCA:CDCA ratio [unitless]

  • TDCA.DCA -4 -4 TDCA:DCA ratio [unitless]

  • CA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Cholic acid levels were log2 transformed

  • CDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Chenodeoxycholic acid levels were log2 transformed

  • DCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Deoxycholic acid levels were log2 transformed

  • GCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Glycocholic acid levels were log2 transformed

  • GCDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Glycochenodeoxycholic acid levels were log2 transformed

  • GDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Glycodeoxycholic acid levels were log2 transformed

  • GLCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Glycolithocholic acid levels were log2 transformed

  • GUDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Glycoursodeoxycholic acid levels were log2 transformed

  • TCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Taurocholic acid levels were log2 transformed

  • TCDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Taurochenodeoxycholic acid levels were log2 transformed

  • TDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Taurodeoxycholic acid levels were log2 transformed

  • TLCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Taurolithocholic acid levels were log2 transformed

  • TMCA_A_B_LOGTRANSFORMFLAG -4 -4 -4

  • TUDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Tauroursodeoxycholic acid levels were log2 transformed

  • UDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether Ursodeoxycholic acid levels were log2 transformed

  • CA.CDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether CA:CDCA ratio values were log2 transformed

  • DCA.CA_LOGTRANSFORMFLAG -4 -4 Flag showing whether DCA:CA ratio values were log2 transformed

  • GLCA.CDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether GLCA:CDCA ratio values were log2 transformed

  • GDCA.CA_LOGTRANSFORMFLAG -4 -4 Flag showing whether GDCA:CA ratio values were log2 transformed

  • GDCA.DCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether GDCA:DCA ratio values were log2 transformed

  • TDCA.CA_LOGTRANSFORMFLAG -4 -4 Flag showing whether TDCA:CA ratio values were log2 transformed

  • TLCA.CDCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether TLCA:CDCA ratio values were log2 transformed

  • TDCA.DCA_LOGTRANSFORMFLAG -4 -4 Flag showing whether TDCA:DCA ratio values were log2 transformed

Examples